4I1O Crystal structure of the Legionella pneumophila GAP domain of LepB in complex with Rab1b bound to GDP and BeF3 date 2012-11-21
authors Gazdag, E.M., Streller, A., Vetter, I.R., Goody, R.S., Itzen, A.
compound source
symmetry
R_factor
R_Free 0.2486
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.70
ligand BEF, GDP, MG, PEG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, G, E


Primary referenceMechanism of Rab1b deactivation by the Legionella pneumophila GAP LepB., Mihai Gazdag E, Streller A, Haneburger I, Hilbi H, Vetter IR, Goody RS, Itzen A, EMBO Rep. 2013 Jan 4. doi: 10.1038/embor.2012.211. PMID:23288104
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (585 Kb) [Save to disk]
  • Biological Unit Coordinates (4i1o.pdb1.gz) 146 Kb
  • Biological Unit Coordinates (4i1o.pdb2.gz) 148 Kb
  • Biological Unit Coordinates (4i1o.pdb3.gz) 147 Kb
  • Biological Unit Coordinates (4i1o.pdb4.gz) 147 Kb
  • LPC: Ligand-Protein Contacts for 4I1O
  • CSU: Contacts of Structural Units for 4I1O
  • Structure Factors (535 Kb)
  • Retrieve 4I1O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4I1O from S2C, [Save to disk]
  • Re-refined 4i1o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4I1O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4I1O
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4I1O, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4i1o_E] [4i1o] [4i1o_C] [4i1o_D] [4i1o_G] [4i1o_H] [4i1o_A] [4i1o_B] [4i1o_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4I1O: [RAB ] by SMART
    • Other resources with information on 4I1O
  • Community annotation for 4I1O at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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