4I1Q Cell Adhesion date Nov 21, 2012
title Crystal Structure Of Hbrap1 N-Bar Domain
authors M.J.Sanchez-Barrena
compound source
Molecule: Bridging Integrator 2
Chain: A, B
Fragment: N-Bar Domain, Unp Residues 20-238
Synonym: Breast Cancer-Associated Protein 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bin2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh5alpha
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t-2
symmetry Space Group: P 21 21 21
R_factor 0.196 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.147 81.278 81.101 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.53 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceBin2 Is a Membrane Sculpting N-BAR Protein That Influences Leucocyte Podosomes, Motility and Phagocytosis., Sanchez-Barrena MJ, Vallis Y, Clatworthy MR, Doherty GJ, Veprintsev DB, Evans PR, McMahon HT, PLoS One. 2012;7(12):e52401. doi: 10.1371/journal.pone.0052401. Epub 2012 Dec 20. PMID:23285027
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (4i1q.pdb1.gz) 69 Kb
  • CSU: Contacts of Structural Units for 4I1Q
  • Structure Factors (2499 Kb)
  • Retrieve 4I1Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4I1Q from S2C, [Save to disk]
  • Re-refined 4i1q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4I1Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4I1Q
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4I1Q, from MSDmotif at EBI
  • Fold representative 4i1q from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4i1q_A] [4i1q_B] [4i1q]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4I1Q: [BAR ] by SMART
  • Other resources with information on 4I1Q
  • Community annotation for 4I1Q at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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