4I2A Binary complex of mouse TdT with ssDNA in absence of divalent transition metal ion date
authors Gouge, J., Delarue, M.
compound source
symmetry
R_factor
R_Free 0.2185
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand BRU, MG, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructures of Intermediates along the Catalytic Cycle of Terminal Deoxynucleotidyltransferase: Dynamical Aspects of the Two-Metal Ion Mechanism., Gouge J, Rosario S, Romain F, Beguin P, Delarue M, J Mol Biol. 2013 Jul 13. pii: S0022-2836(13)00441-5. doi:, 10.1016/j.jmb.2013.07.009. PMID:23856622
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (137 Kb) [Save to disk]
  • Biological Unit Coordinates (4i2a.pdb1.gz) 130 Kb
  • LPC: Ligand-Protein Contacts for 4I2A
  • CSU: Contacts of Structural Units for 4I2A
  • Structure Factors (1220 Kb)
  • Retrieve 4I2A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4I2A from S2C, [Save to disk]
  • Re-refined 4i2a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4I2A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4I2A
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4I2A, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4i2a_C] [4i2a_A] [4i2a]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4I2A: [POLXc ] by SMART
  • Other resources with information on 4I2A
  • Community annotation for 4I2A at PDBWiki (http://pdbwiki.org)

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