4I3F Crystal structure of serine hydrolase CCSP0084 from the polyaromatic hydrocarbon (PAH)-degrading bacterium Cycloclasticus zankles date 2012-11-26
authors Stogios, P.J., Xu, X., Dong, A., Cui, H., Alcaide, M., Tornes, J., Gertler, C., Yakimov, M.M., Golyshin, P.N., Ferrer, M., Savchenko, A.
compound source
symmetry
R_factor
R_Free 0.1866
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.69
ligand CL, NA, PEG enzyme
Gene Q91
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSingle residues dictate the co-evolution of dual esterases - MCP hydrolases from the alpha/beta hydrolase family., Alcaide M, Tornes J, Stogios PJ, Xu X, Gertler C, Di Leo R, Bargiela R, Lafraya A, Guazzaroni ME, Lopez-Cortes N, Chernikova TN, Golyshina OV, Nechitaylo TY, Plumeier I, Pieper DH, Yakimov MM, Savchenko A, Golyshin PN, Ferrer M, Biochem J. 2013 Jun 10. PMID:23750508
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (4i3f.pdb1.gz) 100 Kb
  • LPC: Ligand-Protein Contacts for 4I3F
  • CSU: Contacts of Structural Units for 4I3F
  • Structure Factors (525 Kb)
  • Retrieve 4I3F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4I3F from S2C, [Save to disk]
  • Re-refined 4i3f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4I3F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4I3F
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4I3F, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4i3f_A] [4i3f]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4I3F
  • Community annotation for 4I3F at PDBWiki (http://pdbwiki.org)

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