4I4F Structure of Focal Adhesion Kinase catalytic domain in complex with an allosteric binding pyrazolobenzothiazine compound. date 2012-11-27
authors Skene, R.J., Hosfield, D.J.
compound source
symmetry
R_factor
R_Free 0.22846
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.75
ligand 1BR, IPA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure-based discovery of cellular-active allosteric inhibitors of FAK., Tomita N, Hayashi Y, Suzuki S, Oomori Y, Aramaki Y, Matsushita Y, Iwatani M, Iwata H, Okabe A, Awazu Y, Isono O, Skene RJ, Hosfield DJ, Miki H, Kawamoto T, Hori A, Baba A, Bioorg Med Chem Lett. 2013 Mar 15;23(6):1779-85. doi: 10.1016/j.bmcl.2013.01.047., Epub 2013 Jan 26. PMID:23414845
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (4i4f.pdb1.gz) 95 Kb
  • LPC: Ligand-Protein Contacts for 4I4F
  • CSU: Contacts of Structural Units for 4I4F
  • Structure Factors (372 Kb)
  • Retrieve 4I4F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4I4F from S2C, [Save to disk]
  • Re-refined 4i4f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4I4F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4I4F
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4I4F, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4i4f_A] [4i4f]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4I4F: [TyrKc ] by SMART
    • Other resources with information on 4I4F
  • Community annotation for 4I4F at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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