4I6L Crystal structure of OTUB1 in complex with ubiquitin variant date 2012-11-29
authors Juang, Y.C., Sicheri, F.
compound source
symmetry
R_factor
R_Free 0.2663
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.49
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA strategy for modulation of enzymes in the ubiquitin system., Ernst A, Avvakumov G, Tong J, Fan Y, Zhao Y, Alberts P, Persaud A, Walker JR, Neculai AM, Neculai D, Vorobyov A, Garg P, Beatty L, Chan PK, Juang YC, Landry MC, Yeh C, Zeqiraj E, Karamboulas K, Allali-Hassani A, Vedadi M, Tyers M, Moffat J, Sicheri F, Pelletier L, Durocher D, Raught B, Rotin D, Yang J, Moran MF, Dhe-Paganon S, Sidhu SS, Science. 2013 Feb 1;339(6119):590-5. doi: 10.1126/science.1230161. Epub 2013 Jan , 3. PMID:23287719
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (106 Kb) [Save to disk]
  • Biological Unit Coordinates (4i6l.pdb1.gz) 100 Kb
  • CSU: Contacts of Structural Units for 4I6L
  • Structure Factors (202 Kb)
  • Retrieve 4I6L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4I6L from S2C, [Save to disk]
  • Re-refined 4i6l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4I6L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4I6L
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4I6L, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4i6l] [4i6l_B] [4i6l_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4I6L: [UBQ ] by SMART
    • Other resources with information on 4I6L
  • Community annotation for 4I6L at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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