4I93 Transferase date Dec 04, 2012
title Structure Of The Bsk8 Kinase Domain (Semet Labeled)
authors C.Gruetter, D.Rauh
compound source
Molecule: Probable Serinethreonine-Protein Kinase At5g4126
Chain: A, B
Fragment: Bsk8 Kinase Domain, Unp Residues 40-328
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress,Thale-Cress
Organism_taxid: 3702
Gene: At5g41260, K1o13.5
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptriex-2-Based Multi-Host Vector
symmetry Space Group: P 1 21 1
R_factor 0.180 R_Free 0.208
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.898 77.552 68.147 90.00 105.67 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand MSE enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural Characterization of the RLCK Family Member BSK8: A Pseudokinase with an Unprecedented Architecture., Grutter C, Sreeramulu S, Sessa G, Rauh D, J Mol Biol. 2013 Aug 2. pii: S0022-2836(13)00482-8. doi:, 10.1016/j.jmb.2013.07.034. PMID:23911552
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (4i93.pdb1.gz) 54 Kb
  • Biological Unit Coordinates (4i93.pdb2.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 4I93
  • CSU: Contacts of Structural Units for 4I93
  • Structure Factors (1993 Kb)
  • Retrieve 4I93 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4I93 from S2C, [Save to disk]
  • Re-refined 4i93 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4I93 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4I93
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4I93, from MSDmotif at EBI
  • Fold representative 4i93 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4i93_A] [4i93] [4i93_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4I93: [STYKc ] by SMART
  • Other resources with information on 4I93
  • Community annotation for 4I93 at PDBWiki (http://pdbwiki.org)

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