4IBL Rubidium Sites in Blood Coagulation Factor VIIa date
authors Vadivel, K., Schmidt, A., Cascio, D., Padmanabhan, K., Bajaj, S.P.
compound source
symmetry
R_factor
R_Free 0.21455
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand BEN, BGC, CA, CGU, CL, FUC, MG, RB enzyme
Gene
Ontology
ChainFunctionProcessComponent
H


L


T


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (113 Kb) [Save to disk]
  • Biological Unit Coordinates (4ibl.pdb1.gz) 106 Kb
  • LPC: Ligand-Protein Contacts for 4IBL
  • CSU: Contacts of Structural Units for 4IBL
  • Structure Factors (943 Kb)
  • Retrieve 4IBL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4IBL from S2C, [Save to disk]
  • Re-refined 4ibl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4IBL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4IBL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4IBL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ibl_T] [4ibl_L] [4ibl] [4ibl_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4IBL: [EGF_CA] [EGF_like] [GLA] [Tryp_SPc ] by SMART
  • Other resources with information on 4IBL
  • Community annotation for 4IBL at PDBWiki (http://pdbwiki.org)

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