4IE9 Bovine PKA C-alpha in complex with 3-pyridylmethyl-5-methyl-1H-pyrazole-3-carboxylate date
authors Dreyer, M.K., Schiffer, A., Lodge, J.
compound source
symmetry
R_factor
R_Free 0.2319
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.92
ligand GOL, PZX, SEP, TPO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


I


Primary referenceAccounting for Conformational Variability in Protein-Ligand Docking with NMR-Guided Rescoring., Skjaerven L, Codutti L, Angelini A, Grimaldi M, Latek D, Monecke P, Dreyer MK, Carlomagno T, J Am Chem Soc. 2013 Apr 17;135(15):5819-27. doi: 10.1021/ja4007468. Epub 2013 Apr, 8. PMID:23565800
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (4ie9.pdb1.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 4IE9
  • CSU: Contacts of Structural Units for 4IE9
  • Structure Factors (641 Kb)
  • Retrieve 4IE9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4IE9 from S2C, [Save to disk]
  • Re-refined 4ie9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4IE9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4IE9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4IE9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ie9_I] [4ie9_A] [4ie9]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4IE9: [S_TK_X] [S_TKc ] by SMART
  • Other resources with information on 4IE9
  • Community annotation for 4IE9 at PDBWiki (http://pdbwiki.org)

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