4II1 Transcription date Dec 19, 2012
title Crystal Structure Of The Zinc Finger Of Zgpat
authors C.Bian, W.Tempel, A.Dong, X.Chao, M.Fu, A.K.Wernimont, C.Bountra, J C.H.Arrowsmith, A.M.Edwards, J.Min, Structural Genomics Consor (Sgc)
compound source
Molecule: Zinc Finger Ccch-Type With G Patch Domain-Contain Protein;
Chain: A, B, C, D
Fragment: Unp Residues 119-268
Synonym: G Patch Domain-Containing Protein 6, Zinc Finger C Domain-Containing Protein 9, Zinc Finger And G Patch Domain Containing Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Zgpat, Gpatc6, Gpatch6, Kiaa1847, Zc3h9, Zc3hdc9, Zip
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Mhl
symmetry Space Group: P 1 21 1
R_factor 0.208 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.170 87.070 76.570 90.00 95.65 90.00
method X-Ray Diffractionresolution 2.65 Å
ligand UNX, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (4ii1.pdb1.gz) 22 Kb
  • Biological Unit Coordinates (4ii1.pdb2.gz) 23 Kb
  • Biological Unit Coordinates (4ii1.pdb3.gz) 20 Kb
  • Biological Unit Coordinates (4ii1.pdb4.gz) 22 Kb
  • LPC: Ligand-Protein Contacts for 4II1
  • CSU: Contacts of Structural Units for 4II1
  • Structure Factors (1072 Kb)
  • Retrieve 4II1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4II1 from S2C, [Save to disk]
  • Re-refined 4ii1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4II1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4II1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4II1, from MSDmotif at EBI
  • Fold representative 4ii1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ii1_C] [4ii1_D] [4ii1_B] [4ii1_A] [4ii1]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4II1: [ZnF_C3H1 ] by SMART
  • Other resources with information on 4II1
  • Community annotation for 4II1 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science