4IIB Crystal structure of beta-glucosidase 1 from Aspergillus aculeatus date 2012-12-20
authors Suzuki, K., Sumitani, J., Kawaguchi, T., Fushinobu, S.
compound source
symmetry
R_factor
R_Free 0.16916
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand ACY, BMA, MAN, MPD, MRD, NA, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal Structures of Glycoside Hydrolase Family 3 beta-Glucosidase 1 from Aspergillus aculeatus., Suzuki K, Sumitani JI, Nam YW, Nishimaki T, Tani S, Wakagi T, Kawaguchi T, Fushinobu S, Biochem J. 2013 Mar 28. PMID:23537284
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (326 Kb) [Save to disk]
  • Biological Unit Coordinates (4iib.pdb1.gz) 313 Kb
  • LPC: Ligand-Protein Contacts for 4IIB
  • CSU: Contacts of Structural Units for 4IIB
  • Structure Factors (2986 Kb)
  • Retrieve 4IIB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4IIB from S2C, [Save to disk]
  • Re-refined 4iib structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4IIB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4IIB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4IIB, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4iib] [4iib_A] [4iib_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4IIB: [Fn3_like ] by SMART
    • Other resources with information on 4IIB
  • Community annotation for 4IIB at PDBWiki (http://pdbwiki.org)

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