4IIR Crystal Structure of AMPPNP-bound Human PRPF4B kinase domain date
authors Mechin, I., Haas, K., Chen, X., Zhang, Y., McLean, L.
compound source
symmetry
R_factor
R_Free 0.2648
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand ANP, MG, PTR, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceEvaluation of cancer dependence and druggability of PRP4 kinase using cellular, biochemical, and structural approaches., Gao Q, Mechin I, Kothari N, Guo Z, Deng G, Haas K, McManus J, Hoffmann D, Wang A, Wiederschain D, Rocnik J, Czechtizky W, Chen X, McLean L, Arlt H, Harper D, Liu F, Majid T, Patel V, Lengauer C, Garcia-Echeverria C, Zhang B, Cheng H, Dorsch M, Huang SM, J Biol Chem. 2013 Sep 3. PMID:24003220
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk]
  • Biological Unit Coordinates (4iir.pdb1.gz) 61 Kb
  • Biological Unit Coordinates (4iir.pdb2.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 4IIR
  • CSU: Contacts of Structural Units for 4IIR
  • Structure Factors (851 Kb)
  • Retrieve 4IIR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4IIR from S2C, [Save to disk]
  • Re-refined 4iir structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4IIR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4IIR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4IIR, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4iir] [4iir_A] [4iir_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4IIR: [S_TKc ] by SMART
    • Other resources with information on 4IIR
  • Community annotation for 4IIR at PDBWiki (http://pdbwiki.org)

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