4IKC Crystal Structure of catalytic domain of PTPRQ date 2012-12-26
authors Yu, K.R., Ryu, S.E., Kim, S.J.
compound source
symmetry
R_factor
R_Free 0.1654
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.56
ligand CL, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for the dephosphorylating activity of PTPRQ towards phosphatidylinositide substrates., Yu KR, Kim YJ, Jung SK, Ku B, Park H, Cho SY, Jung H, Chung SJ, Bae KH, Lee SC, Kim BY, Erikson RL, Ryu SE, Kim SJ, Acta Crystallogr D Biol Crystallogr. 2013 Aug;69(Pt 8):1522-9. doi:, 10.1107/S0907444913010457. Epub 2013 Jul 19. PMID:23897475
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk]
  • Biological Unit Coordinates (4ikc.pdb1.gz) 140 Kb
  • Biological Unit Coordinates (4ikc.pdb2.gz) 279 Kb
  • LPC: Ligand-Protein Contacts for 4IKC
  • CSU: Contacts of Structural Units for 4IKC
  • Structure Factors (315 Kb)
  • Retrieve 4IKC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4IKC from S2C, [Save to disk]
  • Re-refined 4ikc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4IKC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4IKC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4IKC, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ikc_A] [4ikc]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4IKC: [PTPc ] by SMART
    • Other resources with information on 4IKC
  • Community annotation for 4IKC at PDBWiki (http://pdbwiki.org)

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