4IKM X-ray structure of CARD8 CARD domain date
authors Jin, T., Huang, M., Smith, P., Jiang, J., Xiao, T.
compound source
symmetry
R_factor
R_Free 0.2533
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.46
ligand EDO, GLC, IOD, IYR, TYI enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • carbohydrate transmembrane t...


    • Primary referenceThe structure of the CARD8 caspase-recruitment domain suggests its association with the FIIND domain and procaspases through adjacent surfaces., Jin T, Huang M, Smith P, Jiang J, Xiao TS, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 May;69(Pt 5):482-7. doi:, 10.1107/S1744309113010075. Epub 2013 Apr 27. PMID:23695559
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (161 Kb) [Save to disk]
  • Biological Unit Coordinates (4ikm.pdb1.gz) 155 Kb
  • LPC: Ligand-Protein Contacts for 4IKM
  • CSU: Contacts of Structural Units for 4IKM
  • Structure Factors (277 Kb)
  • Retrieve 4IKM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4IKM from S2C, [Save to disk]
  • Re-refined 4ikm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4IKM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4IKM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4IKM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ikm] [4ikm_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4IKM: [CARD ] by SMART
    • Other resources with information on 4IKM
  • Community annotation for 4IKM at PDBWiki (http://pdbwiki.org)

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