4IL0 Lyase date Dec 28, 2012
title Crystal Structure Of Glucdrp From E. Coli K-12 Mg1655 (Efi T 506058)
authors T.Lukk, S.Ghasempur, H.J.Imker, J.A.Gerlt, S.K.Nair, Enzyme Funct Initiative (Efi)
compound source
Molecule: Glucarate Dehydratase-Related Protein
Chain: A, B, C, D, E, F, G, H
Synonym: Gdh-Rp, Glucdrp
Ec: 4.2.1.-
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 511145
Strain: K-12 Substr. Mg1655
Gene: Gudx
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15
symmetry Space Group: P 1
R_factor 0.173 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.090 94.030 155.200 101.47 96.74 79.86
method X-Ray Diffractionresolution 2.80 Å
ligand CIT, GOL enzyme Lyase E.C.4.2.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1105 Kb) [Save to disk]
  • Biological Unit Coordinates (4il0.pdb1.gz) 553 Kb
  • Biological Unit Coordinates (4il0.pdb2.gz) 543 Kb
  • LPC: Ligand-Protein Contacts for 4IL0
  • CSU: Contacts of Structural Units for 4IL0
  • Structure Factors (929 Kb)
  • Retrieve 4IL0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4IL0 from S2C, [Save to disk]
  • Re-refined 4il0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4IL0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4IL0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4IL0, from MSDmotif at EBI
  • Fold representative 4il0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4il0] [4il0_G] [4il0_B] [4il0_C] [4il0_F] [4il0_D] [4il0_H] [4il0_E] [4il0_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4IL0: [MR_MLE ] by SMART
  • Other resources with information on 4IL0
  • Community annotation for 4IL0 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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