4ILE Transport Protein date Dec 31, 2012
title Structure Of Human Adp-Ribosylation Factor-Like 8a Binding T
authors Y.Xie, J.Ren, Z.Cheng, H.Qian
compound source
Molecule: Adp-Ribosylation Factor-Like Protein 8a
Chain: A
Fragment: Unp Residues 1-181
Synonym: Adp-Ribosylation Factor-Like Protein 10b, Novel Sm Protein Indispensable For Equal Chromosome Segregation 2;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Arl8a, Arl10b, Gie2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t-2
symmetry Space Group: P 21 21 2
R_factor 0.181 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
118.032 37.374 39.315 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.68 Å
ligand GDP, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • anterograde axonal transport...

  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (4ile.pdb1.gz) 31 Kb
  • LPC: Ligand-Protein Contacts for 4ILE
  • CSU: Contacts of Structural Units for 4ILE
  • Structure Factors (173 Kb)
  • Retrieve 4ILE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ILE from S2C, [Save to disk]
  • Re-refined 4ile structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ILE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ILE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4ILE, from MSDmotif at EBI
  • Fold representative 4ile from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ile_A] [4ile]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4ILE: [small_GTPase ] by SMART
  • Other resources with information on 4ILE
  • Community annotation for 4ILE at PDBWiki (http://pdbwiki.org)

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