4ILG Crystal structure of Aar2p in complex with the Prp8p RNaseH and Jab1/MPN domains date 2012-12-31
authors Weber, G., Heroven, A.C., Santos, K.F., Wahl, M.C.
compound source
symmetry
R_factor
R_Free 0.2276
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
ligand EPE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


Primary referenceStructural basis for dual roles of Aar2p in U5 snRNP assembly., Weber G, Cristao VF, Santos KF, Jovin SM, Heroven AC, Holton N, Luhrmann R, Beggs JD, Wahl MC, Genes Dev. 2013 Mar 1;27(5):525-40. doi: 10.1101/gad.213207.113. Epub 2013 Feb, 26. PMID:23442228
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (299 Kb) [Save to disk]
  • Biological Unit Coordinates (4ilg.pdb1.gz) 292 Kb
  • LPC: Ligand-Protein Contacts for 4ILG
  • CSU: Contacts of Structural Units for 4ILG
  • Structure Factors (520 Kb)
  • Retrieve 4ILG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ILG from S2C, [Save to disk]
  • Re-refined 4ilg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4ILG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4ILG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4ILG, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ilg_B] [4ilg_A] [4ilg] [4ilg_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4ILG: [JAB_MPN ] by SMART
    • Other resources with information on 4ILG
  • Community annotation for 4ILG at PDBWiki (http://pdbwiki.org)

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