4ILW Hydrolase Hydrolase Inhibitor date Jan 01, 2013
title Complex Of Matrix Metalloproteinase-10 Catalytic Domain (Mmp With Tissue Inhibitor Of Metalloproteinases-2 (Timp-2)
authors J.Batra, A.S.Soares, E.S.Radisky
compound source
Molecule: Metalloproteinase Inhibitor 2
Chain: A, B
Fragment: Tissue Inhibitor Of Metalloproteinases-2
Synonym: Csc-21k, Tissue Inhibitor Of Metalloproteinases 2,
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Timp2
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek 293e
Expression_system_plasmid: Ptttimp2

Molecule: Stromelysin-2
Chain: D, F
Fragment: Matrix Metalloproteinase-10 Catalytic Domain
Synonym: Sl-2, Matrix Metalloproteinase-10, Mmp-10, Transin
Ec: 3.4.24.22
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mmp-10, Mmp10, Stmy2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Mmp-10cd Cdna
symmetry Space Group: P 1
R_factor 0.216 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.687 56.934 82.592 76.14 79.84 71.25
method X-Ray Diffractionresolution 2.10 Å
ligand CA, ZN enzyme Hydrolase E.C.3.4.24.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


F, D


Primary referenceMatrix metalloproteinase-10/TIMP-2 structure and analyses define conserved core interactions and diverse exosite interactions in MMP/TIMP complexes., Batra J, Soares AS, Mehner C, Radisky ES, PLoS One. 2013 Sep 20;8(9):e75836. doi: 10.1371/journal.pone.0075836. PMID:24073280
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (121 Kb) [Save to disk]
  • Biological Unit Coordinates (4ilw.pdb1.gz) 59 Kb
  • Biological Unit Coordinates (4ilw.pdb2.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 4ILW
  • CSU: Contacts of Structural Units for 4ILW
  • Structure Factors (914 Kb)
  • Retrieve 4ILW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ILW from S2C, [Save to disk]
  • Re-refined 4ilw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ILW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ILW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4ILW, from MSDmotif at EBI
  • Fold representative 4ilw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ilw_D] [4ilw_F] [4ilw_B] [4ilw_A] [4ilw]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4ILW: [C345C] [NTR] [ZnMc ] by SMART
  • Other resources with information on 4ILW
  • Community annotation for 4ILW at PDBWiki (http://pdbwiki.org)

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