4IM6 Structural Protein date Jan 02, 2013
title Lrr Domain From Human Nlrp1
authors G.Hahne, T.F.Reubold, S.Eschenburg
compound source
Molecule: Nacht, Lrr And Pyd Domains-Containing Protein 1
Chain: A
Fragment: Lrr Domain (Unp Residues 791-990)
Synonym: Caspase Recruitment Domain-Containing Protein 7, D Effector Filament-Forming Ced-4-Like Apoptosis Protein, Nuc Binding Domain And Caspase Recruitment Domain;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Card7, Defcap, Kiaa0926, Nac, Nalp1, Nlrp1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t1-Tev
symmetry Space Group: P 61 2 2
R_factor 0.134 R_Free 0.183
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.690 84.690 130.470 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.65 Å
ligand CSO, GOL enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (4im6.pdb1.gz) 78 Kb
  • Biological Unit Coordinates (4im6.pdb2.gz) 155 Kb
  • LPC: Ligand-Protein Contacts for 4IM6
  • CSU: Contacts of Structural Units for 4IM6
  • Structure Factors (236 Kb)
  • Retrieve 4IM6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4IM6 from S2C, [Save to disk]
  • Re-refined 4im6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4IM6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4IM6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4IM6, from MSDmotif at EBI
  • Fold representative 4im6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4im6] [4im6_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4IM6: [LRR ] by SMART
  • Other resources with information on 4IM6
  • Community annotation for 4IM6 at PDBWiki (http://pdbwiki.org)

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