4IND Viral Protein date Jan 04, 2013
title The Triple Jelly Roll Fold And Turret Assembly In An Archaea
authors B.J.Eilers, D.Kraft, M.C.Burgess, M.J.Young, C.M.Lawrence
compound source
Molecule: C381 Turret Protein
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R
Engineered: Yes
Organism_scientific: Sulfolobus Turreted Icosahedral Virus
Organism_common: Stiv
Organism_taxid: 269145
Gene: C381
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdest14
symmetry Space Group: P 1
R_factor 0.188 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.774 166.999 186.975 81.84 82.17 81.44
method X-Ray Diffractionresolution 1.80 Å
ligand 2HP enzyme
Gene
Ontology
ChainFunctionProcessComponent
S, F, T, N, K, E, Q, M, C, L, A, J, O, P, B, H, D, R, I, G


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2579 Kb) [Save to disk]
  • Biological Unit Coordinates (4ind.pdb1.gz) 647 Kb
  • Biological Unit Coordinates (4ind.pdb2.gz) 647 Kb
  • Biological Unit Coordinates (4ind.pdb3.gz) 648 Kb
  • Biological Unit Coordinates (4ind.pdb4.gz) 648 Kb
  • LPC: Ligand-Protein Contacts for 4IND
  • CSU: Contacts of Structural Units for 4IND
  • Structure Factors (43135 Kb)
  • Retrieve 4IND in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4IND from S2C, [Save to disk]
  • Re-refined 4ind structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4IND in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4IND
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4IND, from MSDmotif at EBI
  • Fold representative 4ind from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ind_Q] [4ind_E] [4ind_R] [4ind_T] [4ind_J] [4ind_B] [4ind_N] [4ind_M] [4ind_K] [4ind] [4ind_A] [4ind_D] [4ind_G] [4ind_H] [4ind_S] [4ind_P] [4ind_C] [4ind_I] [4ind_O] [4ind_F] [4ind_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4IND
  • Community annotation for 4IND at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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