4IO9	Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans	date
authors	Han, S., Marr, E.S.
compound		source
symmetry		R_factor R_Free 0.2352
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	3.20
ligand	1F2, MG	enzyme
Gene Ontology	Chain Function Process Component 1 2 3 4 A B C D E F G H I J K L M N O P Q R S T U V W Z
Primary reference	Novel 3-O-carbamoyl erythromycin A derivatives (carbamolides) with activity against resistant staphylococcal and streptococcal isolates., Magee TV, Han S, McCurdy SP, Nguyen TT, Granskog K, Marr ES, Maguire BA, Huband MD, Chen JM, Subashi TA, Shanmugasundaram V, Bioorg Med Chem Lett. 2013 Mar 15;23(6):1727-31. doi: 10.1016/j.bmcl.2013.01.067., Epub 2013 Jan 26. PMID:23414806

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1665 Kb) [Save to disk] Biological Unit Coordinates (4io9.pdb1.gz) 1653 Kb LPC: Ligand-Protein Contacts for 4IO9 CSU: Contacts of Structural Units for 4IO9 Structure Factors (5663 Kb) Retrieve 4IO9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4IO9 from S2C, [Save to disk] Re-refined 4io9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4IO9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4IO9

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4IO9, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4io9_E] [4io9_L] [4io9_D] [4io9_2] [4io9_B] [4io9_J] [4io9_W] [4io9_X] [4io9_S] [4io9] [4io9_Y] [4io9_3] [4io9_M] [4io9_V] [4io9_H] [4io9_T] [4io9_4] [4io9_1] [4io9_K] [4io9_A] [4io9_R] [4io9_Q] [4io9_O] [4io9_I] [4io9_F] [4io9_N] [4io9_P] [4io9_G] [4io9_Z] [4io9_C] [4io9_U] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 4IO9: [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C ] by SMART

Other resources with information on 4IO9

Community annotation for 4IO9 at PDBWiki (http://pdbwiki.org)

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