4IOC Crystal structure of compound 4f bound to large ribosomal subunit (50S) from Deinococcus radiodurans date
authors Han, S., Marr, E.S.
compound source
symmetry
R_factor
R_Free 0.2391
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.60
ligand 1F4, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
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4


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C


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F


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Primary referenceNovel 3-O-carbamoyl erythromycin A derivatives (carbamolides) with activity against resistant staphylococcal and streptococcal isolates., Magee TV, Han S, McCurdy SP, Nguyen TT, Granskog K, Marr ES, Maguire BA, Huband MD, Chen JM, Subashi TA, Shanmugasundaram V, Bioorg Med Chem Lett. 2013 Mar 15;23(6):1727-31. doi: 10.1016/j.bmcl.2013.01.067., Epub 2013 Jan 26. PMID:23414806
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1664 Kb) [Save to disk]
  • Biological Unit Coordinates (4ioc.pdb1.gz) 1652 Kb
  • LPC: Ligand-Protein Contacts for 4IOC
  • CSU: Contacts of Structural Units for 4IOC
  • Structure Factors (3423 Kb)
  • Retrieve 4IOC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4IOC from S2C, [Save to disk]
  • Re-refined 4ioc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4IOC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4IOC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4IOC, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ioc_S] [4ioc_T] [4ioc_Q] [4ioc_H] [4ioc_B] [4ioc_D] [4ioc_U] [4ioc_N] [4ioc_I] [4ioc] [4ioc_F] [4ioc_M] [4ioc_J] [4ioc_2] [4ioc_X] [4ioc_A] [4ioc_L] [4ioc_E] [4ioc_R] [4ioc_G] [4ioc_W] [4ioc_Y] [4ioc_4] [4ioc_1] [4ioc_3] [4ioc_Z] [4ioc_K] [4ioc_V] [4ioc_C] [4ioc_O] [4ioc_P]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4IOC: [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C ] by SMART
  • Other resources with information on 4IOC
  • Community annotation for 4IOC at PDBWiki (http://pdbwiki.org)

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