4IOI Meditope-enabled trastuzumab in complex with CQFDLSTRRLKC date 2013-01-07
authors Bzymek, K.P., Zer, C., Avery, K.N., Williams, J.C.
compound source
symmetry
R_factor
R_Free 0.2044
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.95
Gene
Ontology
ChainFunctionProcessComponent
H


Primary referenceIdentification and grafting of a unique peptide-binding site in the Fab framework of monoclonal antibodies., Donaldson JM, Zer C, Avery KN, Bzymek KP, Horne DA, Williams JC, Proc Natl Acad Sci U S A. 2013 Oct 7. PMID:24101516
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (204 Kb) [Save to disk]
  • Biological Unit Coordinates (4ioi.pdb1.gz) 195 Kb
  • CSU: Contacts of Structural Units for 4IOI
  • Structure Factors (359 Kb)
  • Retrieve 4IOI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4IOI from S2C, [Save to disk]
  • Re-refined 4ioi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4IOI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4IOI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4IOI, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ioi_H] [4ioi_E] [4ioi_C] [4ioi_B] [4ioi_A] [4ioi]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4IOI: [IG_like] [IGv ] by SMART
    • Other resources with information on 4IOI
  • Community annotation for 4IOI at PDBWiki (http://pdbwiki.org)

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