4IOP Crystal structure of NKp65 bound to its ligand KACL date
authors Li, Y.
compound source
symmetry
R_factor
R_Free 0.297
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.20
ligand MAN, NAG enzyme
Primary referenceStructure of NKp65 bound to its keratinocyte ligand reveals basis for genetically linked recognition in natural killer gene complex., Li Y, Wang Q, Chen S, Brown PH, Mariuzza RA, Proc Natl Acad Sci U S A. 2013 Jul 9;110(28):11505-10. doi:, 10.1073/pnas.1303300110. Epub 2013 Jun 26. PMID:23803857
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (4iop.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 4IOP
  • CSU: Contacts of Structural Units for 4IOP
  • Structure Factors (159 Kb)
  • Retrieve 4IOP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4IOP from S2C, [Save to disk]
  • Re-refined 4iop structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4IOP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4IOP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4IOP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4iop_B] [4iop] [4iop_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4IOP: [CLECT ] by SMART
  • Other resources with information on 4IOP
  • Community annotation for 4IOP at PDBWiki (http://pdbwiki.org)

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