4IOU Crystal structure of the HIV-1 Vif binding, catalytically active domain of APOBEC3F date
authors Bohn, M., Shandilya, S.M.D., Schiffer, C.A.
compound source
symmetry
R_factor
R_Free 0.2326
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.75
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystal Structure of the DNA Cytosine Deaminase APOBEC3F: The Catalytically Active and HIV-1 Vif-Binding Domain., Bohn MF, Shandilya SM, Albin JS, Kouno T, Anderson BD, McDougle RM, Carpenter MA, Rathore A, Evans L, Davis AN, Zhang J, Lu Y, Somasundaran M, Matsuo H, Harris RS, Schiffer CA, Structure. 2013 May 14. pii: S0969-2126(13)00122-6. doi:, 10.1016/j.str.2013.04.010. PMID:23685212
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk]
  • Biological Unit Coordinates (4iou.pdb1.gz) 30 Kb
  • Biological Unit Coordinates (4iou.pdb2.gz) 30 Kb
  • Biological Unit Coordinates (4iou.pdb3.gz) 29 Kb
  • Biological Unit Coordinates (4iou.pdb4.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 4IOU
  • CSU: Contacts of Structural Units for 4IOU
  • Structure Factors (396 Kb)
  • Retrieve 4IOU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4IOU from S2C, [Save to disk]
  • Re-refined 4iou structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4IOU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4IOU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4IOU, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4iou_B] [4iou] [4iou_D] [4iou_A] [4iou_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4IOU
  • Community annotation for 4IOU at PDBWiki (http://pdbwiki.org)

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