4IPN The complex structure of 6-phospho-beta-glucosidase BglA-2 with thiocellobiose-6P from Streptococcus pneumoniae date
authors Yu, W.L., Jiang, Y.L., Andreas, P., Cheng, W., Bai, X.H., Ren, Y.M., Thompsonn, J., Zhou, C.Z., Chen, Y.X.
compound source
symmetry
R_factor
R_Free 0.2510
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.41
ligand RTG, SGC enzyme
Gene SP
Gene
Ontology
ChainFunctionProcessComponent
E, B


Primary referenceStructural Insights into the Substrate Specificity of a 6-Phospho-beta-glucosidase BglA-2 from Streptococcus pneumoniae TIGR4., Yu WL, Jiang YL, Pikis A, Cheng W, Bai XH, Ren YM, Thompson J, Zhou CZ, Chen Y, J Biol Chem. 2013 May 24;288(21):14949-58. doi: 10.1074/jbc.M113.454751. Epub, 2013 Apr 11. PMID:23580646
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (159 Kb) [Save to disk]
  • Biological Unit Coordinates (4ipn.pdb1.gz) 154 Kb
  • LPC: Ligand-Protein Contacts for 4IPN
  • CSU: Contacts of Structural Units for 4IPN
  • Structure Factors (1795 Kb)
  • Retrieve 4IPN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4IPN from S2C, [Save to disk]
  • Re-refined 4ipn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4IPN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4IPN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4IPN, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ipn_E] [4ipn_B] [4ipn]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4IPN
  • Community annotation for 4IPN at PDBWiki (http://pdbwiki.org)

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