4IS1 Metal Binding Protein Dna date Jan 16, 2013
title Crystal Structure Of Znf217 Bound To Dna
authors M.S.Vandevenne, D.A.Jacques, J.M.Guss, J.P.Mackay
compound source
Molecule: 5'-D(Tptptpgpcpapgpapaptpcpgpaptpt Cpa)-3';
Chain: A
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: 5'-D(Apaptpgpcpapgpapaptpcpgpaptpt Cpa)-3';
Chain: B
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Zinc Finger Protein 217
Chain: C, D
Fragment: Zinc Fingers 6 And 7 (Unp Residues 469-523)
Synonym: Transcription Factor Znf217
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Znf217, Zabc1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta 2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmal
symmetry Space Group: C 1 2 1
R_factor 0.237 R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
124.670 40.980 52.040 90.00 97.21 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand CL, ZN enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (4is1.pdb1.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 4IS1
  • CSU: Contacts of Structural Units for 4IS1
  • Structure Factors (357 Kb)
  • Retrieve 4IS1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4IS1 from S2C, [Save to disk]
  • Re-refined 4is1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4IS1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4IS1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4IS1, from MSDmotif at EBI
  • Fold representative 4is1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4is1_C] [4is1_A] [4is1_D] [4is1] [4is1_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4IS1: [ZnF_C2H2 ] by SMART
  • Other resources with information on 4IS1
  • Community annotation for 4IS1 at PDBWiki (http://pdbwiki.org)

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