4ITQ Crystal structure of hypothetical protein SCO1480 bound to DNA date 2013-01-18
authors Guarne, A., Nanji, T., Gloyd, M., Swiercz, J.P., Elliot, M.A.
compound source
symmetry
R_factor
R_Free 0.3150
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.70
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA novel nucleoid-associated protein specific to the actinobacteria., Swiercz JP, Nanji T, Gloyd M, Guarne A, Elliot MA, Nucleic Acids Res. 2013 Feb 20. PMID:23427309
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (4itq.pdb1.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 4ITQ
  • CSU: Contacts of Structural Units for 4ITQ
  • Structure Factors (73 Kb)
  • Retrieve 4ITQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ITQ from S2C, [Save to disk]
  • Re-refined 4itq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4ITQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4ITQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4ITQ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4itq_B] [4itq] [4itq_C] [4itq_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4ITQ: [HhH1 ] by SMART
    • Other resources with information on 4ITQ
  • Community annotation for 4ITQ at PDBWiki (http://pdbwiki.org)

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