4IUV crystal structure of SHH1 SAWADEE domain in complex with H3K4me1K9me1 peptide date 2013-01-21
authors Du, J., Patel, D.J.
compound source
symmetry
R_factor
R_Free 0.2526
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
ligand CVM, MLZ, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referencePolymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1., Law JA, Du J, Hale CJ, Feng S, Krajewski K, Palanca AM, Strahl BD, Patel DJ, Jacobsen SE, Nature. 2013 May 1. doi: 10.1038/nature12178. PMID:23636332
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk]
  • Biological Unit Coordinates (4iuv.pdb1.gz) 46 Kb
  • Biological Unit Coordinates (4iuv.pdb2.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 4IUV
  • CSU: Contacts of Structural Units for 4IUV
  • Structure Factors (97 Kb)
  • Retrieve 4IUV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4IUV from S2C, [Save to disk]
  • Re-refined 4iuv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4IUV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4IUV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4IUV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4iuv_C] [4iuv_A] [4iuv] [4iuv_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4IUV
  • Community annotation for 4IUV at PDBWiki (http://pdbwiki.org)

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