4IVE Rna Binding Protein date Jan 22, 2013
title Crystal Structure Of A Polyadenylate-Binding Protein 3 (Pabp Homo Sapiens At 2.30 A Resolution
authors Joint Center For Structural Genomics (Jcsg), Partnership For Biology (Tcell)
compound source
Molecule: Polyadenylate-Binding Protein 3
Chain: A, B, C, D
Fragment: Pabc Domain Residues 535-631
Synonym: Pabp-3, Poly(A)-Binding Protein 3, Testis-Specific Binding Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bc027617, Pabp3, Pabpc3, Pabpl3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Pb1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Speedet
symmetry Space Group: P 43
R_factor 0.201 R_Free 0.212
length a length b length c angle alpha angle beta angle gamma
67.395 67.395 101.380 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand CL, MSE enzyme
A, D, C, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk]
  • Biological Unit Coordinates (4ive.pdb1.gz) 104 Kb
  • Biological Unit Coordinates (4ive.pdb2.gz) 54 Kb
  • Biological Unit Coordinates (4ive.pdb3.gz) 52 Kb
  • Biological Unit Coordinates (4ive.pdb4.gz) 28 Kb
  • Biological Unit Coordinates (4ive.pdb5.gz) 28 Kb
  • Biological Unit Coordinates (4ive.pdb6.gz) 27 Kb
  • Biological Unit Coordinates (4ive.pdb7.gz) 27 Kb
  • LPC: Ligand-Protein Contacts for 4IVE
  • CSU: Contacts of Structural Units for 4IVE
  • Structure Factors (4584 Kb)
  • Retrieve 4IVE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4IVE from S2C, [Save to disk]
  • Re-refined 4ive structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4IVE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4IVE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4IVE, from MSDmotif at EBI
  • Fold representative 4ive from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ive_C] [4ive_A] [4ive] [4ive_B] [4ive_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4IVE: [PolyA ] by SMART
  • Other resources with information on 4IVE
  • Community annotation for 4IVE at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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