4IVM Structure of human protoporphyrinogen IX oxidase(R59G) date 2013-01-23
authors Xiaohong, Q., Baifan, W.
compound source
symmetry
R_factor
R_Free 0.2398
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.77
ligand ACJ, FAD, GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceQuantitative structural insight into human variegate porphyria disease., Wang B, Wen X, Qin X, Wang Z, Tan Y, Shen Y, Xi Z, J Biol Chem. 2013 Apr 26;288(17):11731-40. doi: 10.1074/jbc.M113.459768. Epub, 2013 Mar 6. PMID:23467411
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • Biological Unit Coordinates (4ivm.pdb1.gz) 72 Kb
  • Biological Unit Coordinates (4ivm.pdb2.gz) 143 Kb
  • LPC: Ligand-Protein Contacts for 4IVM
  • CSU: Contacts of Structural Units for 4IVM
  • Structure Factors (198 Kb)
  • Retrieve 4IVM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4IVM from S2C, [Save to disk]
  • Re-refined 4ivm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4IVM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4IVM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4IVM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ivm_B] [4ivm]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4IVM
  • Community annotation for 4IVM at PDBWiki (http://pdbwiki.org)

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