4IX7 Crystal Structure of the insv-BEN domain complexed to its DNA target site date 2013-01-24
authors Ren, A., Serganov, A., Patel, D.J.
compound source
symmetry
R_factor
R_Free 0.2164
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.58
ligand MSE enzyme
Primary referenceThe BEN domain is a novel sequence-specific DNA-binding domain conserved in neural transcriptional repressors., Dai Q, Ren A, Westholm JO, Serganov AA, Patel DJ, Lai EC, Genes Dev. 2013 Mar 6. PMID:23468431
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (4ix7.pdb1.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 4IX7
  • CSU: Contacts of Structural Units for 4IX7
  • Structure Factors (1374 Kb)
  • Retrieve 4IX7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4IX7 from S2C, [Save to disk]
  • Re-refined 4ix7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4IX7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4IX7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4IX7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ix7_A] [4ix7_C] [4ix7] [4ix7_B] [4ix7_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4IX7: [BEN ] by SMART
  • Other resources with information on 4IX7
  • Community annotation for 4IX7 at PDBWiki (http://pdbwiki.org)

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