4J12 monomeric Fc date
authors Ishino, T., Wang, M., Mosyak, L., Tam, A., Duan, W., Svenson, K., Joyce, A., Hara, D.O., Lin, L., Somers, W., Kriz, R.
compound source
symmetry
R_factor
R_Free 0.2380
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand BMA, MAN, NAG enzyme
Primary referenceEngineering a Monomeric Fc Domain Modality by N-Glycosylation for the Half-life Extension of Biotherapeutics., Ishino T, Wang M, Mosyak L, Tam A, Duan W, Svenson K, Joyce A, O'Hara DM, Lin L, Somers WS, Kriz R, J Biol Chem. 2013 Jun 7;288(23):16529-37. doi: 10.1074/jbc.M113.457689. Epub 2013, Apr 24. PMID:23615911
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (4j12.pdb1.gz) 39 Kb
  • Biological Unit Coordinates (4j12.pdb2.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 4J12
  • CSU: Contacts of Structural Units for 4J12
  • Structure Factors (191 Kb)
  • Retrieve 4J12 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4J12 from S2C, [Save to disk]
  • Re-refined 4j12 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4J12 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4J12
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4J12, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4j12] [4j12_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4J12: [IG_like] [IGc1 ] by SMART
    • Other resources with information on 4J12
  • Community annotation for 4J12 at PDBWiki (http://pdbwiki.org)

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