4J2N	Crystal Structure of mycobacteriophage Pukovnik Xis	date	2013-02-04
authors	Homa, N.J., Amrich, C.G., Heroux, A., VanDemark, A.P.
compound		source
symmetry		R_factor R_Free 0.2670
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.35
ligand	SO4	enzyme
Gene	PUKOVNIK
Gene Ontology	Chain Function Process Component A, D, C, E, B
Primary reference	The Structure of Xis Reveals the Basis for Filament Formation and Insight into DNA Bending within a Mycobacteriophage Intasome., Singh S, Plaks JG, Homa NJ, Amrich CG, Heroux A, Hatfull GF, Vandemark AP, J Mol Biol. 2013 Oct 7. pii: S0022-2836(13)00628-1. doi:, 10.1016/j.jmb.2013.10.002. PMID:24112940

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk] Biological Unit Coordinates (4j2n.pdb1.gz) 46 Kb LPC: Ligand-Protein Contacts for 4J2N CSU: Contacts of Structural Units for 4J2N Structure Factors (548 Kb) Retrieve 4J2N in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4J2N from S2C, [Save to disk] Re-refined 4j2n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4J2N in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4J2N

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4J2N, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4j2n_D] [4j2n_C] [4j2n] [4j2n_A] [4j2n_B] [4j2n_E] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4J2N

Community annotation for 4J2N at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---