4J2X Transcription Dna Binding Protein Dna date Feb 05, 2013
title Csl (Rbp-Jk) With Corepressor Kyot2 Bound To Dna
authors K.J.Collins, R.A.Kovall
compound source
Molecule: Recombining Binding Protein Suppressor Of Hairles
Chain: A, C
Fragment: Core Domain (Unp Residues 53-474)
Synonym: Csl, Cbf-1, Supressor Of Hairless, Lag-1, J Kappa- Recombination Signal-Binding Protein, Rbp-J Kappa;
Engineered: Yes
Mutation: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Igkjrb1, Igkrsbp, Rbp-Jk, Rbpj, Rbpsuh
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p1

Molecule: Four And A Half Lim Domains Protein 1
Chain: B, D
Fragment: See Remark 999
Synonym: Fhl-1, Kyot, Rbp-Associated Molecule 14-1, Ram14-1 Muscle Lim-Protein 1, Slim, Slim-1;
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Fhl1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28b+

Molecule: 5'-D(Apaptpcptptptpcpcpcpapcpapgpt
Chain: E, G
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: 5'-D(Tptpapcptpgptpgpgpgpapapapgpa
Chain: F, H
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.188 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.157 97.293 144.102 90.00 93.17 90.00
method X-Ray Diffractionresolution 2.85 Å
ligand EDO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary referenceStructure and Function of the CSL-KyoT2 Corepressor Complex: A Negative Regulator of Notch Signaling., Collins KJ, Yuan Z, Kovall RA, Structure. 2014 Jan 7;22(1):70-81. doi: 10.1016/j.str.2013.10.010. Epub 2013 Nov , 27. PMID:24290140
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (363 Kb) [Save to disk]
  • Biological Unit Coordinates (4j2x.pdb1.gz) 179 Kb
  • Biological Unit Coordinates (4j2x.pdb2.gz) 178 Kb
  • LPC: Ligand-Protein Contacts for 4J2X
  • CSU: Contacts of Structural Units for 4J2X
  • Structure Factors (657 Kb)
  • Retrieve 4J2X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4J2X from S2C, [Save to disk]
  • Re-refined 4j2x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4J2X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4J2X
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4J2X, from MSDmotif at EBI
  • Fold representative 4j2x from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4j2x_F] [4j2x_C] [4j2x_D] [4j2x] [4j2x_G] [4j2x_H] [4j2x_B] [4j2x_A] [4j2x_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4J2X: [BTD] [LAG1_DNAbind ] by SMART
  • Other resources with information on 4J2X
  • Community annotation for 4J2X at PDBWiki (http://pdbwiki.org)

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