4J3M Tankyrase 2 in complex with 3-chloro-4-(4-methyl-2-oxo-1,2-dihydroquinolin-7-yl)benzoic acid date 2013-02-06
authors Jansson, A.E., Larsson, E.A., Nordlund, P.L.
compound source
symmetry
R_factor
R_Free 0.2178
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand AJ8, GOL, SO4, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceFragment-based ligand design of novel potent inhibitors of tankyrases., Larsson EA, Jansson A, Ng FM, Then SW, Panicker R, Liu B, Sangthongpitag K, Pendharkar V, Tai SJ, Hill J, Dan C, Ho SY, Cheong WW, Poulsen A, Blanchard S, Lin GR, Alam J, Keller TH, Nordlund P, J Med Chem. 2013 Jun 13;56(11):4497-508. doi: 10.1021/jm400211f. Epub 2013 Jun 4. PMID:23672613
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (4j3m.pdb1.gz) 40 Kb
  • Biological Unit Coordinates (4j3m.pdb2.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 4J3M
  • CSU: Contacts of Structural Units for 4J3M
  • Structure Factors (607 Kb)
  • Retrieve 4J3M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4J3M from S2C, [Save to disk]
  • Re-refined 4j3m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4J3M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4J3M
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4J3M, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4j3m_B] [4j3m] [4j3m_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4J3M
  • Community annotation for 4J3M at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science