4J48 Crystal structure of XIAP-BIR2 domain with AMRV bound date 2013-02-06
authors Gosu, R.
compound source
symmetry
R_factor
R_Free 0.25335
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
ligand GOL, SO4, ZN enzyme
Primary referenceThe structure of XIAP BIR2: understanding the selectivity of the BIR domains., Lukacs C, Belunis C, Crowther R, Danho W, Gao L, Goggin B, Janson CA, Li S, Remiszewski S, Schutt A, Thakur MK, Singh SK, Swaminathan S, Pandey R, Tyagi R, Gosu R, Kamath AV, Kuglstatter A, Acta Crystallogr D Biol Crystallogr. 2013 Sep 1;69(Pt 9):1717-25. doi:, 10.1107/S0907444913016284. Epub 2013 Aug 15. PMID:23999295
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (4j48.pdb1.gz) 30 Kb
  • Biological Unit Coordinates (4j48.pdb2.gz) 27 Kb
  • LPC: Ligand-Protein Contacts for 4J48
  • CSU: Contacts of Structural Units for 4J48
  • Structure Factors (179 Kb)
  • Retrieve 4J48 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4J48 from S2C, [Save to disk]
  • Re-refined 4j48 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4J48 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4J48
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4J48, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4j48] [4j48_B] [4j48_A] [4j48_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4J48: [BIR ] by SMART
    • Other resources with information on 4J48
  • Community annotation for 4J48 at PDBWiki (http://pdbwiki.org)

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