4J5P Crystal Structure of a Covalently Bound alpha-Ketoheterocycle Inhibitor (Phenhexyl/Oxadiazole/Pyridine) to a Humanized Variant of Fatty Acid Amide Hydrolase date
authors Otrubova, K., Brown, M., McCormick, M.S., Han, G.W., Neal, S.T.O., Cravatt, B.F., Stevens, R.C., Lichtman, A.H., Boger, D.L.
compound source
symmetry
R_factor
R_Free 0.26487
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
ligand BR1, CL, PEG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • phospholipid binding


    • Primary referenceRational design of Fatty Acid amide hydrolase inhibitors that act by covalently bonding to two active site residues., Otrubova K, Brown M, McCormick MS, Han GW, O'Neal ST, Cravatt BF, Stevens RC, Lichtman AH, Boger DL, J Am Chem Soc. 2013 Apr 24;135(16):6289-99. doi: 10.1021/ja4014997. Epub 2013 Apr, 12. PMID:23581831
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (362 Kb) [Save to disk]
  • Biological Unit Coordinates (4j5p.pdb1.gz) 355 Kb
  • LPC: Ligand-Protein Contacts for 4J5P
  • CSU: Contacts of Structural Units for 4J5P
  • Structure Factors (993 Kb)
  • Retrieve 4J5P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4J5P from S2C, [Save to disk]
  • Re-refined 4j5p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4J5P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4J5P
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4J5P, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4j5p_B] [4j5p] [4j5p_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4J5P
  • Community annotation for 4J5P at PDBWiki (http://pdbwiki.org)

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