4J5S TARG1 (C6orf130), Terminal ADP-ribose Glycohydrolase 1 ADP-ribose complex date 2013-02-09
authors Schellenberg, M.J., Appel, C.D., Krahn, J., Williams, R.S.
compound source
symmetry
R_factor
R_Free 0.1750
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.55
ligand BO4, CL, EDO, SBE, ZZC enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceDeficiency of terminal ADP-ribose protein glycohydrolase TARG1/C6orf130 in neurodegenerative disease., Sharifi R, Morra R, Denise Appel C, Tallis M, Chioza B, Jankevicius G, Simpson MA, Matic I, Ozkan E, Golia B, Schellenberg MJ, Weston R, Williams JG, Rossi MN, Galehdari H, Krahn J, Wan A, Trembath RC, Crosby AH, Ahel D, Hay R, Ladurner AG, Timinszky G, Williams RS, Ahel I, EMBO J. 2013 Mar 12. doi: 10.1038/emboj.2013.51. PMID:23481255
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (232 Kb) [Save to disk]
  • Biological Unit Coordinates (4j5s.pdb1.gz) 63 Kb
  • Biological Unit Coordinates (4j5s.pdb2.gz) 59 Kb
  • Biological Unit Coordinates (4j5s.pdb3.gz) 55 Kb
  • Biological Unit Coordinates (4j5s.pdb4.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 4J5S
  • CSU: Contacts of Structural Units for 4J5S
  • Structure Factors (1332 Kb)
  • Retrieve 4J5S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4J5S from S2C, [Save to disk]
  • Re-refined 4j5s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4J5S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4J5S
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4J5S, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4j5s_A] [4j5s_D] [4j5s_B] [4j5s_C] [4j5s]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4J5S: [A1pp ] by SMART
    • Other resources with information on 4J5S
  • Community annotation for 4J5S at PDBWiki (http://pdbwiki.org)

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