4J7N Crystal structure of mouse DXO in complex with M7GPPPG cap date
authors Kilic, T., Chang, J.H., Tong, L.
compound source
symmetry
R_factor
R_Free 0.200
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.50
ligand 9MG, EDO, GTG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA mammalian pre-mRNA 5' end capping quality control mechanism and an unexpected link of capping to pre-mRNA processing., Jiao X, Chang JH, Kilic T, Tong L, Kiledjian M, Mol Cell. 2013 Apr 11;50(1):104-15. doi: 10.1016/j.molcel.2013.02.017. Epub 2013 , Mar 21. PMID:23523372
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (4j7n.pdb1.gz) 70 Kb
  • LPC: Ligand-Protein Contacts for 4J7N
  • CSU: Contacts of Structural Units for 4J7N
  • Structure Factors (528 Kb)
  • Retrieve 4J7N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4J7N from S2C, [Save to disk]
  • Re-refined 4j7n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4J7N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4J7N
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4J7N, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4j7n_A] [4j7n]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4J7N
  • Community annotation for 4J7N at PDBWiki (http://pdbwiki.org)

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