4J9S Human DNA polymerase eta-DNA translocated binary complex: with TA base pair date 2013-02-16
authors Zhao, Y., Gregory, M., Biertumpfel, C., Hua, Y., Hanaoka, F., Yang, W.
compound source
symmetry
R_factor
R_Free 0.2222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.95
ligand GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMechanism of somatic hypermutation at the WA motif by human DNA polymerase eta., Zhao Y, Gregory MT, Biertumpfel C, Hua YJ, Hanaoka F, Yang W, Proc Natl Acad Sci U S A. 2013 May 14;110(20):8146-51. doi:, 10.1073/pnas.1303126110. Epub 2013 Apr 29. PMID:23630267
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (4j9s.pdb1.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 4J9S
  • CSU: Contacts of Structural Units for 4J9S
  • Structure Factors (298 Kb)
  • Retrieve 4J9S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4J9S from S2C, [Save to disk]
  • Re-refined 4j9s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4J9S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4J9S
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4J9S, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4j9s_A] [4j9s_P] [4j9s] [4j9s_T]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4J9S
  • Community annotation for 4J9S at PDBWiki (http://pdbwiki.org)

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