4JAN crystal structure of broadly neutralizing antibody CH103 in complex with HIV-1 gp120 date
authors Zhou, T., Moquin, S., Zheng, A., Srivatsan, S., Kwong, P.D.
compound source
symmetry
R_factor
R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.15
ligand GOL, NA, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
I, G


Primary referenceCo-evolution of a broadly neutralizing HIV-1 antibody and founder virus., Liao HX, Lynch R, Zhou T, Gao F, Alam SM, Boyd SD, Fire AZ, Roskin KM, Schramm CA, Zhang Z, Zhu J, Shapiro L, Becker J, Benjamin B, Blakesley R, Bouffard G, Brooks S, Coleman H, Dekhtyar M, Gregory M, Guan X, Gupta J, Han J, Hargrove A, Ho SL, Johnson T, Legaspi R, Lovett S, Maduro Q, Masiello C, Maskeri B, McDowell J, Montemayor C, Mullikin J, Park M, Riebow N, Schandler K, Schmidt B, Sison C, Stantripop M, Thomas J, Thomas P, Vemulapalli M, Young A, Mullikin JC, Gnanakaran S, Hraber P, Wiehe K, Kelsoe G, Yang G, Xia SM, Montefiori DC, Parks R, Lloyd KE, Scearce RM, Soderberg KA, Cohen M, Kamanga G, Louder MK, Tran LM, Chen Y, Cai F, Chen S, Moquin S, Du X, Joyce MG, Srivatsan S, Zhang B, Zheng A, Shaw GM, Hahn BH, Kepler TB, Korber BT, Kwong PD, Mascola JR, Haynes BF, Nature. 2013 Apr 3. doi: 10.1038/nature12053. PMID:23552890
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (559 Kb) [Save to disk]
  • Biological Unit Coordinates (4jan.pdb1.gz) 277 Kb
  • Biological Unit Coordinates (4jan.pdb2.gz) 276 Kb
  • LPC: Ligand-Protein Contacts for 4JAN
  • CSU: Contacts of Structural Units for 4JAN
  • Structure Factors (341 Kb)
  • Retrieve 4JAN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JAN from S2C, [Save to disk]
  • Re-refined 4jan structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4JAN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4JAN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JAN, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jan_I] [4jan_H] [4jan_A] [4jan_G] [4jan_B] [4jan_L] [4jan]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4JAN: [IG_like] [IGv ] by SMART
  • Other resources with information on 4JAN
  • Community annotation for 4JAN at PDBWiki (http://pdbwiki.org)

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