OCA Atlas for 4JBI

4JBI

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

NDP, ZN

enzyme

Gene
Ontology

Chain	Function	Process	Component
C, P, I, L, B, M, E, O, K, G, F, N, A, H, J, D

Primary reference

Physicochemical Characterization of a Thermostable Alcohol Dehydrogenase from Pyrobaculum aerophilum., Vitale A, Thorne N, Lovell S, Battaile KP, Hu X, Shen M, D'Auria S, Auld DS, PLoS One. 2013 Jun 5;8(6):e63828. doi: 10.1371/journal.pone.0063828. Print 2013. PMID:23755111

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (819 Kb) [Save to disk]

Biological Unit Coordinates (4jbi.pdb1.gz) 213 Kb

Biological Unit Coordinates (4jbi.pdb2.gz) 211 Kb

Biological Unit Coordinates (4jbi.pdb3.gz) 209 Kb

Biological Unit Coordinates (4jbi.pdb4.gz) 210 Kb

LPC: Ligand-Protein Contacts for 4JBI

CSU: Contacts of Structural Units for 4JBI

Structure Factors (12196 Kb)

Retrieve 4JBI in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4JBI from S2C, [Save to disk]

Re-refined 4jbi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4JBI in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4jbi] [4jbi_A] [4jbi_B] [4jbi_C] [4jbi_D] [4jbi_E] [4jbi_F] [4jbi_G] [4jbi_H] [4jbi_I] [4jbi_J] [4jbi_K] [4jbi_L] [4jbi_M] [4jbi_N] [4jbi_O] [4jbi_P]

SWISS-PROT database:

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