4JCQ Hydrolase date Feb 22, 2013
title Clpp1 From Listeria Monocytogenes
authors E.Zeiler, A.List, F.Alte, M.Gersch, R.Wachtel, M.Groll, S.Sieber
compound source
Molecule: Atp-Dependent Clp Protease Proteolytic Subunit
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R V, W, X, Y, Z, A, B;
Synonym: Endopeptidase Clp
Ec: 3.4.21.92
Engineered: Yes
Organism_scientific: Listeria Monocytogenes
Organism_taxid: 169963
Strain: Atcc Baa-679 Egd-E
Gene: Clpp, Lmo1138
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21de3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdest Gateway
symmetry Space Group: P 1 21 1
R_factor 0.192 R_Free 0.213
crystal
cell
length a length b length c angle alpha angle beta angle gamma
140.950 109.060 196.260 90.00 93.16 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand
enzyme Hydrolase E.C.3.4.21.92 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
S, F, T, N, K, Y, E, V, Z, Q, M, C, L, A, J, O, W, X, P, B, H, D, R, I, G, U


a, b


Primary referenceStructural and functional insights into caseinolytic proteases reveal an unprecedented regulation principle of their catalytic triad., Zeiler E, List A, Alte F, Gersch M, Wachtel R, Poreba M, Drag M, Groll M, Sieber SA, Proc Natl Acad Sci U S A. 2013 Jul 9;110(28):11302-7. doi:, 10.1073/pnas.1219125110. Epub 2013 Jun 24. PMID:23798410
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1675 Kb) [Save to disk]
  • Biological Unit Coordinates (4jcq.pdb1.gz) 422 Kb
  • Biological Unit Coordinates (4jcq.pdb2.gz) 423 Kb
  • Biological Unit Coordinates (4jcq.pdb3.gz) 423 Kb
  • Biological Unit Coordinates (4jcq.pdb4.gz) 419 Kb
  • Biological Unit Coordinates (4jcq.pdb5.gz) 837 Kb
  • Biological Unit Coordinates (4jcq.pdb6.gz) 832 Kb
  • CSU: Contacts of Structural Units for 4JCQ
  • Structure Factors (5754 Kb)
  • Retrieve 4JCQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JCQ from S2C, [Save to disk]
  • Re-refined 4jcq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4JCQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4JCQ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4JCQ, from MSDmotif at EBI
  • Fold representative 4jcq from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jcq] [4jcq_N] [4jcq_A] [4jcq_Y] [4jcq_B] [4jcq_Z] [4jcq_C] [4jcq_F] [4jcq_D] [4jcq_T] [4jcq_M] [4jcq_S] [4jcq_U] [4jcq_a] [4jcq_J] [4jcq_I] [4jcq_E] [4jcq_O] [4jcq_P] [4jcq_K] [4jcq_X] [4jcq_W] [4jcq_R] [4jcq_G] [4jcq_H] [4jcq_b] [4jcq_Q] [4jcq_L] [4jcq_V]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4JCQ
  • Community annotation for 4JCQ at PDBWiki (http://pdbwiki.org)

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