4JF5 Structure of OXA-23 at pH 4.1 date 2013-02-27
authors Smith, C.A., Vakulenko, S.B.
compound source
symmetry
R_factor
R_Free 0.1622
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.15
ligand EDO, FLC enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Basis for Carbapenemase Activity of the OXA-23 beta-Lactamase from Acinetobacter baumannii., Smith CA, Antunes NT, Stewart NK, Toth M, Kumarasiri M, Chang M, Mobashery S, Vakulenko SB, Chem Biol. 2013 Sep 19;20(9):1107-15. doi: 10.1016/j.chembiol.2013.07.015. Epub, 2013 Sep 5. PMID:24012371
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk]
  • Biological Unit Coordinates (4jf5.pdb1.gz) 93 Kb
  • LPC: Ligand-Protein Contacts for 4JF5
  • CSU: Contacts of Structural Units for 4JF5
  • Structure Factors (2215 Kb)
  • Retrieve 4JF5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JF5 from S2C, [Save to disk]
  • Re-refined 4jf5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4JF5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4JF5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JF5, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jf5_A] [4jf5]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4JF5
  • Community annotation for 4JF5 at PDBWiki (http://pdbwiki.org)

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