4JGH Structure of the SOCS2-Elongin BC complex bound to an N-terminal fragment of Cullin5 date 2013-03-01
authors Kim, Y.K., Kwak, M.J., Ku, B., Suh, H.Y., Joo, K., Lee, J., Jung, J.U., Oh, B.H.
compound source
symmetry
R_factor
R_Free .248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.00
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


D


Primary referenceStructural basis of intersubunit recognition in elongin BC-cullin 5-SOCS box ubiquitin-protein ligase complexes., Kim YK, Kwak MJ, Ku B, Suh HY, Joo K, Lee J, Jung JU, Oh BH, Acta Crystallogr D Biol Crystallogr. 2013 Aug;69(Pt 8):1587-97. doi:, 10.1107/S0907444913011220. Epub 2013 Jul 20. PMID:23897481
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (123 Kb) [Save to disk]
  • Biological Unit Coordinates (4jgh.pdb1.gz) 118 Kb
  • Biological Unit Coordinates (4jgh.pdb2.gz) 118 Kb
  • CSU: Contacts of Structural Units for 4JGH
  • Structure Factors (415 Kb)
  • Retrieve 4JGH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JGH from S2C, [Save to disk]
  • Re-refined 4jgh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4JGH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4JGH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JGH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jgh_C] [4jgh_D] [4jgh_B] [4jgh_A] [4jgh]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4JGH: [SH2] [SOCS] [SOCS_box] [Skp1] [UBQ ] by SMART
  • Other resources with information on 4JGH
  • Community annotation for 4JGH at PDBWiki (http://pdbwiki.org)

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