4JHN Unknown Function date Mar 05, 2013
title The Crystal Structure Of The Rpgr Rcc1-Like Domain
authors D.Waetzlich, I.Vetter, A.Wittinghofer, S.Ismail
compound source
Molecule: X-Linked Retinitis Pigmentosa Gtpase Regulator
Chain: A, B, C, D
Fragment: Rpgr (1-392) The Rcc1-Like Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rpgr, Rp3, Xlrp3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.185 R_Free 0.218
length a length b length c angle alpha angle beta angle gamma
57.490 118.730 92.630 90.00 101.54 90.00
method X-Ray Diffractionresolution 1.70 Å
Primary referenceThe interplay between RPGR, PDEdelta and Arl2/3 regulate the ciliary targeting of farnesylated cargo., Watzlich D, Vetter I, Gotthardt K, Miertzschke M, Chen YX, Wittinghofer A, Ismail S, EMBO Rep. 2013 Apr 5. doi: 10.1038/embor.2013.37. PMID:23559067
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (244 Kb) [Save to disk]
  • Biological Unit Coordinates (4jhn.pdb1.gz) 63 Kb
  • Biological Unit Coordinates (4jhn.pdb2.gz) 63 Kb
  • Biological Unit Coordinates (4jhn.pdb3.gz) 62 Kb
  • Biological Unit Coordinates (4jhn.pdb4.gz) 62 Kb
  • CSU: Contacts of Structural Units for 4JHN
  • Structure Factors (976 Kb)
  • Retrieve 4JHN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JHN from S2C, [Save to disk]
  • Re-refined 4jhn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4JHN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4JHN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4JHN, from MSDmotif at EBI
  • Fold representative 4jhn from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jhn_B] [4jhn_A] [4jhn_C] [4jhn_D] [4jhn]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4JHN
  • Community annotation for 4JHN at PDBWiki (http://pdbwiki.org)

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