4JHO Structural analysis and insights into glycon specificity of the rice GH1 Os7BGlu26 beta-D-mannosidase date
authors Tankrathok, A., Luang, S., Robinson, R.C., Kimura, A., Hrmova, M., Cairns, J.R.Ketudat.
compound source
symmetry
R_factor
R_Free 0.21921
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.21
ligand EPE, GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural analysis and insights into the glycon specificity of the rice GH1 Os7BGlu26 beta-D-mannosidase., Tankrathok A, Iglesias-Fernandez J, Luang S, Robinson RC, Kimura A, Rovira C, Hrmova M, Ketudat Cairns JR, Acta Crystallogr D Biol Crystallogr. 2013 Oct;69(Pt 10):2124-35. doi:, 10.1107/S0907444913020568. Epub 2013 Sep 20. PMID:24100330
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk]
  • Biological Unit Coordinates (4jho.pdb1.gz) 86 Kb
  • LPC: Ligand-Protein Contacts for 4JHO
  • CSU: Contacts of Structural Units for 4JHO
  • Structure Factors (492 Kb)
  • Retrieve 4JHO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JHO from S2C, [Save to disk]
  • Re-refined 4jho structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4JHO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4JHO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JHO, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jho_A] [4jho]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4JHO
  • Community annotation for 4JHO at PDBWiki (http://pdbwiki.org)

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