4JHX Transferase date Mar 05, 2013
title Crystal Structure Of Anabolic Ornithine Carbamoyltransferase Vibrio Vulnificus In Complex With Carbamoylphosphate And Ar
authors I.G.Shabalin, P.Bacal, J.Winsor, S.Grimshaw, M.Grabowski, M.D.Cho L.Shuvalova, W.F.Anderson, W.Minor, Center For Structural Geno Infectious Diseases (Csgid)
compound source
Molecule: Ornithine Carbamoyltransferase
Chain: A, B, C
Synonym: Otcase
Ec: 2.1.3.3
Engineered: Yes
 Organism_scientific: Vibrio Vulnificus
Organism_taxid: 216895
Strain: Cmcp6
Gene: Argf, Vv1_1466
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: P 21 21 21
R_factor 0.154 R_Free 0.190
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.029 79.387 147.169 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand ARG, CL, CP, PEG enzyme Transferase E.C.2.1.3.3 BRENDA
Gene VV1
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (319 Kb) [Save to disk]
  • Biological Unit Coordinates (4jhx.pdb1.gz) 312 Kb
  • LPC: Ligand-Protein Contacts for 4JHX
  • CSU: Contacts of Structural Units for 4JHX
  • Structure Factors (1080 Kb)
  • Retrieve 4JHX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JHX from S2C, [Save to disk]
  • Re-refined 4jhx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4JHX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4JHX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JHX, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jhx] [4jhx_B] [4jhx_C] [4jhx_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4JHX
  • Community annotation for 4JHX at PDBWiki (http://pdbwiki.org)

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