4JIE Hydrolase date Mar 05, 2013
title Structural Analysis And Insights Into Glycon Specificity Of Gh1 Os7bglu26 Beta-D-Mannosidase
authors A.Tankrathok, S.Luang, R.C.Robinson, A.Kimura, M.Hrmova, J.R.Ketu Cairns
compound source
Molecule: Beta-Mannosidasebeta-Glucosidase
Chain: A
Engineered: Yes
Organism_scientific: Oryza Sativa Indica Group
Organism_common: Indian Rice
Organism_taxid: 39946
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: P 21 21 21
R_factor 0.153 R_Free 0.195
length a length b length c angle alpha angle beta angle gamma
68.010 73.624 133.984 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.45 Å
ligand BMA, EPE, GOL enzyme Hydrolase E.C. BRENDA

Primary referenceStructural analysis and insights into the glycon specificity of the rice GH1 Os7BGlu26 beta-D-mannosidase., Tankrathok A, Iglesias-Fernandez J, Luang S, Robinson RC, Kimura A, Rovira C, Hrmova M, Ketudat Cairns JR, Acta Crystallogr D Biol Crystallogr. 2013 Oct;69(Pt 10):2124-35. doi:, 10.1107/S0907444913020568. Epub 2013 Sep 20. PMID:24100330
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (4jie.pdb1.gz) 83 Kb
  • LPC: Ligand-Protein Contacts for 4JIE
  • CSU: Contacts of Structural Units for 4JIE
  • Structure Factors (435 Kb)
  • Retrieve 4JIE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JIE from S2C, [Save to disk]
  • Re-refined 4jie structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4JIE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4JIE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4JIE, from MSDmotif at EBI
  • Fold representative 4jie from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jie_A] [4jie]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4JIE
  • Community annotation for 4JIE at PDBWiki (http://pdbwiki.org)

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